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Control in the anterior kidney of all three species early in the infection. Boxplot displays median and interquartile range, and circles are outliers. *denotes p < 0.05; **denotes p < 0.001. Competing interests The authors declare that they have no competing interests. Authors' contributions BJGS contributed to experimental design, performed microarray, immunoassay and qPCR work and statistical an
T direction of fold change. Primers were designed to ensure equal amplification for all species to ensure correct estimates of expression levels, as shown for collagenase-3 log2(qPCR) against log2 (microarray) shown for (B) Atlantic and (C) pink salmon. chm = chum; pnk = pink; atl = Atlantic; AK = anterior kidney; S = skin; gene acronyms are as per the primer table (Additional file 4: Table S2). A