Reviously reported probe annotation ([35,75] Agilent eArray AMADID: 025055) as per manufacturer's instructions and slides were washed using stabilization solution to minimize ozone-related problems (Agilent; [76]). Slides were kept in the dark in a low ozone atmosphere and scanned on a ScanArray Express (Perkin Elmer) at constant PMT settings to produce saturated median values for 1 of spots (Cy
Sion analysis. Here all species were normalized together, and probes used only if they passed quality control in all species (Agilent). Enrichment analysis of up- or down-regulated gene lists was performed using Entrez-ID identifiers imported into the DAVID bioinformatics platform [78] using a background list specific to each species (all entities passing quality control filter for each experiment
Esponse of naive Atlantic, chinook and coho salmon to experimental infection with Lepeophtheirus salmonis (Copepoda: Caligidae). Dis Aquat Organ 1992, 14(3):179?93. Krasnov A, Skugor S, Todorcevic M, Glover KA, Nilsen F: Gene expression in Atlantic salmon skin in response to infection with the parasitic copepod Lepeophtheirus salmonis, cortisol implant, and their combination. BMC Genomics 2012, 13
Esponse of naive Atlantic, chinook and coho salmon to experimental infection with Lepeophtheirus salmonis (Copepoda: Caligidae). Dis Aquat Organ 1992, 14(3):179?93. Krasnov A, Skugor S, Todorcevic M, Glover KA, Nilsen F: Gene expression in Atlantic salmon skin in response to infection with the parasitic copepod Lepeophtheirus salmonis, cortisol implant, and their combination. BMC Genomics 2012, 13
A lice on juvenile Pacific salmon in the Gulf Islands area of British Columbia, Canada. Aquaculture 2009, 297(1?):31?7. Wagner GN, Fast MD, Johnson SC: Physiology and immunology of Lepeophtheirus salmonis infections of salmonids. Trends Parasitol 2008, 24(4):176?83. Jones SRM, Kim E, Bennett W: Early development of resistance to the salmon louse, Lepeophtheirus salmonis (Kr er), in juvenile pink s
Ected p-value 0.05 and fold change 1.5. In experiments with a time component (e.g., Atlantic or pink salmon anterior kidney), a 2-way ANOVA was used to detect probes with a significant effect of infection and those with a time-infection interaction effect. Probes with a main effect but no interaction effect were filtered to retain only those that varied by 1.5 fold between control and experiment
Irus salmonis secretory/excretory products and their effects on Atlantic salmon immune gene regulation. Parasite Immunol 2007, 29(4):179?89. Fast MD, Muise DM, Easy RE, Ross NW, Johnson SC: The effects of Lepeophtheirus salmonis infections on the stress response and immunological status of Atlantic salmon (Salmo salar). Fish Shellfish Immunol 2006, 21(3):228?41. Fast MD, Ross NW, Johnson SC: Prost
Irus salmonis secretory/excretory products and their effects on Atlantic salmon immune gene regulation. Parasite Immunol 2007, 29(4):179?89. Fast MD, Muise DM, Easy RE, Ross NW, Johnson SC: The effects of Lepeophtheirus salmonis infections on the stress response and immunological status of Atlantic salmon (Salmo salar). Fish Shellfish Immunol 2006, 21(3):228?41. Fast MD, Ross NW, Johnson SC: Prost